Impact

Gim, N., Ferguson, A., Blazes, M., Soundarajan, S., Gasimova, A., Jiang, Y., Sanchez Gutiérrez, C., Zalunardo, L., Corradetti, G., Elze, T., Honda, N., Waheed, N., Cairns, A. M., C., Lee, A. Y., Sadda, S. R., Keenan, T. D. L., Patel, B., & Lee, C. S., on behalf of the Ryan Initiative For Macular Research (RIMR) Consortium. (2025). Experimental Eye Research, 110342. https://doi.org/10.1016/j.exer.2025.110342

AI-READI Consortium. (2024). AI-READI: rethinking AI data collection, preparation and sharing in diabetes research and beyond. Nature Metabolism. https://doi.org/10.1038/s42255-024-01165-x

Marroquin, C., Clark, J., Portillo, D., Soundarajan, S., Ngo, T., & Patel, B. (2024). SODA: Software to Support the Curation and Sharing of FAIR Autonomic Nervous System Data. Journal of Open Source Software, 9(100), 6140, https://doi.org/10.21105/joss.06140

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool. Scientific Data, 10(1). https://doi.org/10.1038/s41597-023-02463-x

Soundarajan, S., Kuruppu, S., Singh, A., Kim, J., & Achalla, M. (2022). SPARClink: an interactive tool to visualize the impact of the SPARC program. F1000Research, 11, 124. https://doi.org/10.12688/f1000research.75071.1

Shahidi, N., Lin, X., Munarko, Y., Rasmy, L., & Ngo, T. (2021). AQUA: an Advanced QUery Architecture for the SPARC Portal. F1000Research, 10, 930. https://doi.org/10.12688/f1000research.73018.1

Hallaj, S., Heinke, A., Kalaw, F. G. P., Gim, N., Blazes, M., Owen, J., Dysinger, E., Benton, E. S., Cordier, B. A., Evans, N. G., Li-Pook-Than, J., Snyder, M. P., Nebeker, C., Zangwill, L. M., Baxter, S. L., McWeeney, S., Lee, C. S., Lee, A. Y., Patel, B., & on behalf of the AI-READI Consortium. (2025). Open Data Sharing in Clinical Research and Participants Privacy: Challenges and Opportunities in the Era of Artificial Intelligence. ArXiv. https://doi.org/10.48550/arXiv.2508.01140

Caufield, H., Ghosh, S., Kong, S. W., Parker, J., Sheffield, N., Patel, B., Williams, A., Clark, T., & Munoz-Torres, M. C. (2025). Standards in the Preparation of Biomedical Research Metadata: A Bridge2AI Perspective. arXiv. https://doi.org/10.48550/arXiv.2508.01141

Clark, T., Caufield, H., Mohan, J. A., Al, S. M., Amorim, E., Eddy, J., Gim, N., ... Patel, B., Williams, A., & Munoz-Torres, M. C. (2024). AI-readiness for Biomedical Data: Bridge2AI Recommendations. BioRxiv. https://doi.org/10.1101/2024.10.23.619844

Alavi, A., Cha, K., Esfarjani, D. P., Patel, B., Than, J. L. P., Lee, A. Y., Nebeker, C., Snyder, M., & Bahmani, A. (2024). Perspective on Harnessing Large Language Models to Uncover Insights in Diabetes Wearable Data. MedRxiv. https://doi.org/10.1101/2024.07.29.24310315

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2022). Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2022.04.18.488694

Quey, R., Schiefer, M. A., Kiran, A., & Patel, B. (2021). KnowMore: an automated knowledge discovery tool for the FAIR SPARC datasets. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2021.08.08.455581

Bandrowski, A., Grethe, J. S., Pilko, A., Gillespie, T., Pine, G., Patel, B., Surles-Zeigler, M., & Martone, M. E. (2021). SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2021.02.10.430563

Eye ACT Home Page (started 2025). https://github.com/EyeACT/eyeactstudy.org (Development status: Active)

Codefair. (started 2024). https://github.com/fairdataihub/codefair-app (Development status: Active)

Envision Portal (started 2024). https://github.com/EyeACT/envision-portal (Development status: Active)

FAIRhub data portal. (started 2022). https://github.com/AI-READI/fairhub-portal (Development status: Active)

FAIRhub study management platform. (started 2022). https://github.com/AI-READI/fairhub-app (Development status: Active)

pyfairdatatools. (started 2022). https://github.com/AI-READI/pyfairdatatools (Development status: Active)

FAIRshare. (started 2021). https://github.com/fairdataihub/FAIRshare (Development status: Active)

SODA. (started 2019). https://github.com/fairdataihub/SODA-for-SPARC (Development status: Active)

AI-READI Consortium. (2022). Flagship Dataset of Type 2 Diabetes from the AI-READI Project (1.0.0). FAIRhub. https://doi.org/10.60775/fairhub.1

Patel, B., Portillo, D., & Soundarajan, S. (2025, October 5). Making Research Software Findable, Accessible, Interoperable, Reusable (FAIR) with Codefair. US Research Software Engineering Conference 2025 (USRSE'25), Philadelphia, PA. Zenodo. https://doi.org/10.5281/zenodo.17268745

Patel, B., Garijo, D., & Actionable FAIR4RS Task Force. (2025, October 5). Presenting the Actionable Guidelines for FAIR Research Software Task Force (Presentation). US Research Software Engineering Conference 2025 (USRSE'25), Philadelphia, PA. Zenodo. https://doi.org/10.5281/zenodo.17268673

Portillo, D., Soundarajan, S., Clark, J., & Patel, B. (2024). Codefair: Make biomedical research software FAIR without breaking a sweat (13:912). F1000 Research. https://doi.org/10.7490/f1000research.1119824.1

Portillo, D., Soundarajan, S., Clark, J., & Patel, B. (2024). Codefair: Your Personal Assistant for Developing FAIR Software (Presentation) (1.0.0). Zenodo. https://zenodo.org/records/13948381

Patel, B. (2024). Presentation - Making FAIR Fair to the Researchers (Force11 Conference - Force2024) (1.0.0). Zenodo. https://zenodo.org/records/13159874

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). FAIR-BioRS: Actionable guidelines for making biomedical research software FAIR. F1000 Research Limited. https://doi.org/10.7490/f1000research.1119609.1

Patel, B., & Soundarajan, S. (2022). Making biomedical research software findable, accessible, interoperable, reusable (FAIR) with FAIRshare. F1000 Research Limited. https://doi.org/10.7490/F1000RESEARCH.1119055.1

Portillo D, Soundarajan S and Patel B. Codefair: easily make Biomedical Research Software Findable, Accessible, Interoperable, Reusable (FAIR) [version 1; not peer reviewed]. F1000Research 2025, 14:745 (poster) (https://doi.org/10.7490/f1000research.1120251.1)

Patel, B., Garijo, D., & Actionable FAIR4RS Task Force. (2025). Presenting the Actionable Guidelines for FAIR Research Software Task Force (Poster) (1.0.0). US Research Software Engineering Conference 2025 (USRSE'25), Philadelphia, PA. Zenodo. https://doi.org/10.5281/zenodo.17268692

Patel, B., Soundarajan, S., Gasimova, A., Gim, N., Shaffer, J., & Lee, A. (2024). Clinical Dataset Structure: A Universal Standard for Structuring Clinical Research Data and Metadata (Poster) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984769

Portillo, D, Soundarajan, S, Clark, J & Patel, B. (2024). Codefair - Make biomedical research software FAIR without breaking a sweat (13:911). F1000Research. https://doi.org/10.7490/f1000research.1119823.1

Portillo, D, Soundarajan, S, Clark, J & Patel, B. (2024). Codefair - Your Personal Assistant for Developing FAIR Software (Poster) (1.0.0). Zenodo. https://zenodo.org/records/13948350

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). FAIR-BioRS: Actionable guidelines for making biomedical research software FAIR. F1000 Research Limited. https://doi.org/10.7490/f1000research.1119608.1

Patel, B., & Soundarajan, S. (2022). Making biomedical research software FAIR with FAIRshare. F1000 Research Limited. https://doi.org/10.7490/F1000RESEARCH.1119054.1

Lee, C., Patel, B., & Baxter, S. (2024). Introduction to AI-READI, Studying Salutogenesis in T2DM (Bridge2AI Lecture Series) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984755

Lee, C., Patel, B., & Baxter, S. (2024). Introduction to AI-READI, Studying Salutogenesis in T2DM (dkNET Presentation) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984710

Lee, A., Owen, J., Patel, B., Nebeker, C., Lee, C., Zangwill, L., Hurst, S., Singer, S., Li-Pook-Than, J., & Matthews, D. (2024). AI-READI Code of Conduct (2.0). Zenodo. https://zenodo.org/records/13328255

Contreras, J., Evans, B., Hurst, S., Patel, B., Mcweeney, S., Lee, C., & Lee, A. (2024). License terms for reusing the AI-READI dataset (1.0). Zenodo. https://doi.org/10.5281/zenodo.10642459

Lee, A., Owen, J., Patel, B., Nebeker, C., Lee, C., Zangwill, L., Hurst, S., & Singer, S. (2023). AI-READI Steering Committee Charter (1.0). Zenodo. https://doi.org/10.5281/zenodo.7641684

Patel, B., Soundarajan, S., McWeeney, S., Cordier, B. A., & Benton, E. S. (2022). Software Development Best Practices of the AI-READI Project (v1.0.0). Zenodo. https://doi.org/10.5281/zenodo.7363102

SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data. (2021). SPARC. https://sparc.science/news-and-events/community-spotlight/success-stories/sharing-is-caring-making-sparc-data-fair-with-soda