Impact

AI-READI Consortium. (2024). AI-READI: rethinking AI data collection, preparation and sharing in diabetes research and beyond. Nature Metabolism. https://doi.org/10.1038/s42255-024-01165-x

Marroquin, C., Clark, J., Portillo, D., Soundarajan, S., Ngo, T., & Patel, B. (2024). SODA: Software to Support the Curation and Sharing of FAIR Autonomic Nervous System Data. Journal of Open Source Software, 9(100), 6140, https://doi.org/10.21105/joss.06140

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool. Scientific Data, 10(1). https://doi.org/10.1038/s41597-023-02463-x

Soundarajan, S., Kuruppu, S., Singh, A., Kim, J., & Achalla, M. (2022). SPARClink: an interactive tool to visualize the impact of the SPARC program. F1000Research, 11, 124. https://doi.org/10.12688/f1000research.75071.1

Shahidi, N., Lin, X., Munarko, Y., Rasmy, L., & Ngo, T. (2021). AQUA: an Advanced QUery Architecture for the SPARC Portal. F1000Research, 10, 930. https://doi.org/10.12688/f1000research.73018.1

Clark, T., Caufield, H., Mohan, J. A., Al, S. M., Amorim, E., Eddy, J., Gim, N., ... Patel, B., Williams, A., & Munoz-Torres, M. C. (2024). AI-readiness for Biomedical Data: Bridge2AI Recommendations. BioRxiv. https://doi.org/10.1101/2024.10.23.619844

Alavi, A., Cha, K., Esfarjani, D. P., Patel, B., Than, J. L. P., Lee, A. Y., Nebeker, C., Snyder, M. & Bahmani, A. (2024). Perspective on Harnessing Large Language Models to Uncover Insights in Diabetes Wearable Data. MedRxiv. https://doi.org/10.1101/2024.07.29.24310315

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2022). Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2022.04.18.488694

Bandrowski, A., Grethe, J. S., Pilko, A., Gillespie, T., Pine, G., Patel, B., Surles-Zeigler, M., & Martone, M. E. (2021). SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2021.02.10.430563

Quey, R., Schiefer, M. A., Kiran, A., & Patel, B. (2021). KnowMore: an automated knowledge discovery tool for the FAIR SPARC datasets. Cold Spring Harbor Laboratory. BioRxiv. https://doi.org/10.1101/2021.08.08.455581

Codefair. (started 2024). https://github.com/fairdataihub/codefair-app (Development status: Active)

FAIRhub study management platform. (started 2022). https://github.com/AI-READI/fairhub-app (Development status: Active)

FAIRhub data portal. (started 2022). https://github.com/AI-READI/fairhub-portal (Development status: Active)

pyfairdatatools. (started 2022). https://github.com/AI-READI/pyfairdatatools (Development status: Active)

FAIRshare. (started 2021). https://github.com/fairdataihub/FAIRshare (Development status: Active)

SODA. (started 2019). https://github.com/fairdataihub/SODA-for-SPARC (Development status: Active)

AI-READI Consortium. (2022). Flagship Dataset of Type 2 Diabetes from the AI-READI Project (1.0.0). FAIRhub. https://doi.org/10.60775/fairhub.1

Portillo, D., Soundarajan, S., Clark, J., & Patel, B. (2024). Codefair: Your Personal Assistant for Developing FAIR Software (Presentation) (1.0.0). Zenodo. https://zenodo.org/records/13948381

Patel, B. (2024). Presentation - Making FAIR Fair to the Researchers (Force11 Conference - Force2024) (1.0.0). Zenodo. https://zenodo.org/records/13159874

Portillo, D., Soundarajan, S., Clark, J., & Patel, B. (2024). Codefair: Make biomedical research software FAIR without breaking a sweat (13:912). F1000 Research. https://doi.org/10.7490/f1000research.1119824.1

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). FAIR-BioRS: Actionable guidelines for making biomedical research software FAIR. F1000 Research Limited. https://doi.org/10.7490/f1000research.1119609.1

Patel, B., & Soundarajan, S. (2022). Making biomedical research software findable, accessible, interoperable, reusable (FAIR) with FAIRshare. F1000 Research Limited. https://doi.org/10.7490/F1000RESEARCH.1119055.1

Patel, B., Soundarajan, S., Gasimova, A., Gim, N., Shaffer, J., & Lee, A. (2024). Clinical Dataset Structure: A Universal Standard for Structuring Clinical Research Data and Metadata (Poster) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984769

Portillo, D, Soundarajan, S, Clark, J & Patel, B. (2024). Codefair - Your Personal Assistant for Developing FAIR Software (Poster) (1.0.0). Zenodo. https://zenodo.org/records/13948350

Portillo, D, Soundarajan, S, Clark, J & Patel, B. (2024). Codefair - Make biomedical research software FAIR without breaking a sweat (13:911). F1000Research. https://doi.org/10.7490/f1000research.1119823.1

Patel, B., Soundarajan, S., Ménager, H., & Hu, Z. (2023). FAIR-BioRS: Actionable guidelines for making biomedical research software FAIR. F1000 Research Limited. https://doi.org/10.7490/f1000research.1119608.1

Patel, B., & Soundarajan, S. (2022). Making biomedical research software FAIR with FAIRshare. F1000 Research Limited. https://doi.org/10.7490/F1000RESEARCH.1119054.1

Lee, C., Patel, B., & Baxter, S. (2024). Introduction to AI-READI, Studying Salutogenesis in T2DM (dkNET Presentation) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984710

Lee, C., Patel, B., & Baxter, S. (2024). Introduction to AI-READI, Studying Salutogenesis in T2DM (Bridge2AI Lecture Series) (1.0.0). Zenodo. https://doi.org/10.5281/zenodo.13984755

Lee, A., Owen, J., Patel, B., Nebeker, C., Lee, C., Zangwill, L., Hurst, S., Singer, S., Li-Pook-Than, J., & Matthews, D. (2024). AI-READI Code of Conduct (2.0). Zenodo. https://zenodo.org/records/13328255

Contreras, J., Evans, B., Hurst, S., Patel, B., Mcweeney, S., Lee, C., & Lee, A. (2024). License terms for reusing the AI-READI dataset (1.0). Zenodo. https://doi.org/10.5281/zenodo.10642459

Lee, A., Owen, J., Patel, B., Nebeker, C., Lee, C., Zangwill, L., Hurst, S., & Singer, S. (2023). AI-READI Steering Committee Charter (1.0). Zenodo. https://doi.org/10.5281/zenodo.7641684

Patel, B., Soundarajan, S., McWeeney, S., Cordier, B. A., & Benton, E. S. (2022). Software Development Best Practices of the AI-READI Project (v1.0.0). Zenodo. https://doi.org/10.5281/zenodo.7363102

SPARC Data Structure: Rationale and Design of a FAIR Standard for Biomedical Research Data. (2021). SPARC. https://sparc.science/news-and-events/community-spotlight/success-stories/sharing-is-caring-making-sparc-data-fair-with-soda